Research Article

Development of a Transposon-Based Genome Engineering Toolkit for Efficient and Adaptable Genetic Modifications in Wolfiporia cocos

Research Article
Seungwoo Baek, Bogun Kim, Duleepa Pathiraja, In-Geol Choi
ACS Synthetic Biology
Publication year: 2025

Complete genome sequence of candidate probiotic Limosilactobacillus fermentuum KUFM407

Research Article
Bogun Kim, Xiaoyue Xu, Hyunju Lee, Duleepa Pathiraja, Kim Jae-Young, Yi Hyun Choi, In-Geol Choi, Sae Hun Kim
Journal of Animal Science and Technology, Volume 66, Issue 4, Page 859
Publication year: 2024

Metabarcoding of eDNA for tracking the floral and geographical origins of bee honey.

Research Article
Pathiraja, D., Cho, J., Kim, J. and Choi, I.G.
Food Research International, 164, p.112413.
Publication year: 2023

Effect of Probiotic-Fortified Infant Formula on Infant Gut Health and Microbiota Modulation.

Research Article
Eor, J.Y., Lee, C.S., Moon, S.H., Cheon, J.Y., Pathiraja, D., Park, B., Shin, M.J., Kim, J.Y., Kim, S., Noh, Y. and Kim, Y.
Food Science of Animal Resources, 43(4), p.659.
Publication year: 2023

Constructing Marine Bacterial Metabolic Chassis for Potential Biorefinery of Red Algal Biomass and Agaropectin Wastes

Research Article
Pathiraja, D., Park, B., Kim, B., Stougaard, P. and Choi, I.G.
ACS Synthetic Biology, Volume 12, Issue 6, Page 1782-1793
Publication year: 2023

Complete genome sequence of Limosilactobacillus fermentum JNU532 as a probiotic candidate for the functional food and feed supplements.

Research Article
Kim, B., Meng, Z., Xiaoyue, X., Baek, S., Pathiraja, D., Choi, I.G. and Oh, S.
Journal of Animal Science and Technology, 65(1), p.271.
Publication year: 2023

Complete genome and two plasmids sequences of Lactiplantibacillus plantarum L55 for probiotic potentials.

Research Article
Kim, B., Xu, X., Lee, H., Pathiraja, D., Kim, K., Choi, I.G. and Oh, S.
Journal of Animal Science and Technology.
Publication year: 2023

Soil environment reshapes microbiota of laboratory-maintained Collembola during host development.

Research Article
Pathiraja, D., Wee, J., Cho, K. and Choi, I.G.
Environmental microbiome, 17(1), p.16.
Publication year: 2022

Enzymatic Process for the Carrageenolytic Bioconversion of Sulfated Polygalactans into β-Neocarrabiose and 3, 6-Anhydro-d-galactose.

Research Article
Pathiraja, D., Cho, J., Stougaard, P. and Choi, I.G.
Journal of Agricultural and Food Chemistry, 71(1), pp.635-645.
Publication year: 2022

Aurantiacibacter sediminis sp. nov., a marine bacterium isolated from a tidal flat.

Research Article
Kim, C.H., Yoo, Y., Kim, D., Khim, J.S., Pathiraja, D., Kim, B., Choi, I.G. and Kim, J.J.
International Journal of Systematic and Evolutionary Microbiology, 72(6), p.005406.
Publication year: 2022

Novosphingobium aureum sp. nov., a marine bacterium isolated from salt flat sediment.

Research Article
Yoo, Y., Kim, D., Lee, H., Khim, J.S., Kim, B., Yang, D., Pathiraja, D., Choi, I.G. and Kim, J.J.
International Journal of Systematic and Evolutionary Microbiology, 71(7), p.004930.
Publication year: 2021

Metabolism perturbation Caused by the overexpression of carbon monoxide dehydrogenase/Acetyl-CoA synthase gene complex accelerated gas to acetate conversion rate of Eubacterium limosum KIST612.

Research Article
Kang, H., Park, B., Oh, S., Pathiraja, D., Kim, J.Y., Jung, S., Jeong, J., Cha, M., Park, Z.Y., Choi, I.G. and Chang, I.S.
Bioresource technology, 341, p.125879.
Publication year: 2021

Dietary sophorolipid accelerates growth by modulation of gut microbiota population and intestinal environments in broiler chickens.

Research Article
Kwak, M.J., Park, M.Y., Choi, Y.S., Cho, J., Pathiraja, D., Kim, J., Lee, H., Choi, I.G. and Whang, K.Y.
Journal of Animal Science and Biotechnology, 12(1), pp.1-9.
Publication year: 2021

Altererythrobacter lutimaris sp. nov., a marine bacterium isolated from a tidal flat and reclassification of Altererythrobacter deserti, Altererythrobacter estronivorus and Altererythrobacter muriae as Tsuneonella deserti comb. nov., Croceicoccus estronivorus comb. nov. and Alteripontixanthobacter muriae comb. nov.

Research Article
Kim, D., Yoo, Y., Khim, J.S., Yang, D., Pathiraja, D., Park, B., Choi, I.G. and Kim, J.J.
International Journal of Systematic and Evolutionary Microbiology, 71(12), p.005134.
Publication year: 2021

A novel auxiliary agarolytic pathway expands metabolic versatility in the agar-degrading marine bacterium Colwellia echini A3

Research Article
Pathiraja, D., Christiansen, L., Park, B., Schultz-Johansen, M., Bang, G., Stougaard, P. and Choi, I.G.
Applied and environmental microbiology, 87(12), pp.e00230-21.
Publication year: 2021

Preparation of a ribosomally synthesized fungal peptide toxin precursor and its in-vitro cyclization.

Research Article
Pathiraja, D., Byun, J., Lee, S. and Choi, I.G.
Journal of biotechnology, 308, pp.124-129.
Publication year: 2020

Novel monomeric fungal subtilisin inhibitor from a plant-pathogenic fungus, Choanephora cucurbitarum: isolation and molecular characterization.

Research Article
Pathiraja, D., Chun, Y., Cho, J., Min, B., Lee, S., Park, H., Byun, J. and Choi, I.G.
Applied and environmental microbiology, 86(22), pp.e01818-20.
Publication year: 2020

Muricauda ochracea sp. nov., isolated from a tidal flat in the Republic of Korea.

Research Article
Kim, D., Yoo, Y., Khim, J.S., Yang, D., Pathiraja, D., Choi, I.G. and Kim, J.J.
International Journal of Systematic and Evolutionary Microbiology, 70(8), pp.4555-4561.
Publication year: 2020

Marinobacter halodurans sp. nov., a halophilic bacterium isolated from sediment of a salt flat.

Research Article
Yoo, Y., Lee, H., Kwon, B.O., Khim, J.S., Baek, S., Pathiraja, D., Park, B., Choi, I.G., Kim, G.H., Kim, B.S. and Kim, J.J.
International Journal of Systematic and Evolutionary Microbiology, 70(12), pp.6294-6300.
Publication year: 2020

Characterization of two leaf rust-resistant Aegilops tauschii accessions for the synthetic wheat development.

Research Article
Lee, A., Trinh, C.S., Lee, W.J., Kim, M., Lee, H., Pathiraja, D., Choi, I.G., Chung, N., Choi, C., Lee, B.C. and Lee, H.
Applied Biological Chemistry, 63, pp.1-14.
Publication year: 2020

A multifunctional polysaccharide utilization gene cluster in Colwellia echini encodes enzymes for the complete degradation of κ-Carrageenan, ι-Carrageenan, and Hybrid β/κ-Carrageenan.

Research Article
Christiansen, L., Pathiraja, D., Bech, P.K., Schultz-Johansen, M., Hennessy, R., Teze, D., Choi, I.G. and Stougaard, P.
MSphere, 5(1), pp.10-1128
Publication year: 2020

Gene‐Centric Metagenome Analysis Reveals Gene Clusters for Carbon Monoxide Conversion and Validates Isolation of a Clostridial Acetogen for C2 Chemical Production.

Research Article
Kang, H., Park, B., Bolo, N.R., Pathiraja, D., Park, S., Cha, M., Choi, I.G. and Chang, I.S.
Biotechnology journal, 14(6), p.1800471.
Publication year: 2019

Draft genome sequences of two glycoalkaloid-degrading Arthrobacter strains isolated from green potato peel.

Research Article
Hennessy, R.C., Park, B., Pathiraja, D., Choi, I.G., Schultz-Johansen, M. and Stougaard, P.
Microbiology Resource Announcements, 8(16), pp.e00226-19.
Publication year: 2019

Model-based complete enzymatic production of 3, 6-anhydro-L-galactose from red algal biomass.

Research Article
Pathiraja, D., Lee, S. and Choi, I.G.
Journal of agricultural and food chemistry, 66(26), pp.6814-6821.
Publication year: 2018

Draft genome sequences of Chryseobacterium lactis NCTC11390T isolated from milk, Chryseobacterium oncorhynchi 701B-08T from rainbow trout, and Chryseobacterium viscerum 687B-08T from diseased fish.

Research Article
Jeong, J.J., Lee, Y.J., Pathiraja, D., Park, B., Choi, I.G. and Kim, K.D.
Genome Announcements, 6(26), pp.e00628-18.
Publication year: 2018

Draft genome sequences of Bacillus megaterium KU143, Microbacterium testaceum KU313, and Pseudomonas protegens AS15, isolated from stored rice grains.

Research Article
Jeong, J.J., Moon, H.J., Pathiraja, D., Park, B., Choi, I.G. and Kim, K.D.
Genome Announcements, 6(22), pp.e00468-18.
Publication year: 2018

Draft genome sequence of phosphate-solubilizing Chryseobacterium sp. strain ISE14, a biocontrol and plant growth-promoting rhizobacterium isolated from cucumber.

Research Article
Jeong, J.J., Sang, M.K., Pathiraja, D., Park, B., Choi, I.G. and Kim, K.D.
Genome Announcements, 6(26), pp.e00612-18.
Publication year: 2018

Draft genome sequence of a novel Serratia sp. strain with antifungal activity.

Research Article
Dichmann, S.I., Park, B., Pathiraja, D., Choi, I.G., Stougaard, P. and Hennessy, R.C.
Microbiology Resource Announcements, 7(22), pp.e01340-18.
Publication year: 2018

Rapid and robust enzymatic sensing and quantitation of 3, 6-Anhydro-L-galactose in a heterogeneous sugar mixture.

Research Article
Pathiraja, D., Kim, K.H. and Choi, I.G.
Carbohydrate research, 446, pp.13-18.
Publication year: 2017

Olfactory receptor 544 reduces adiposity by steering fuel preference toward fats

Research Article
Wu, C., Hwang, S.H., Jia, Y., Choi, J., Kim, Y.J., Choi, D., Pathiraja, D., Choi, I.G., Koo, S.H. and Lee, S.J.
The Journal of clinical investigation, 127(11), pp.4118-4123.
Publication year: 2017