Publications

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Topology across scales on heterogeneous cell data

Journal Articles
Torras-Pérez M, Yoon IH, Weeratunga P, Ho LP, Byrne HM, Tillmann U, Harrington HA
PLoS Computational Biology. 2025;21:e1013460.
Publication year: 2025

Temporo-spatial cellular atlas of the regenerating alveolar niche in idiopathic pulmonary fibrosis

Journal Articles
Weeratunga P, Hunter B, Sergeant M, Bull J, Clelland C, Denney L, Vuppusetty C, Burgoyne R, Woo J, Hu T, et al.
Nature Communications. 2025;16:7150.
Publication year: 2025

Rapid, point-of-care antigen tests for diagnosis of SARS-CoV-2 infection

Journal Articles
Dinnes J, Berhane S, Walsh J, Reidy P, Doherty A, Hillier B, Scandrett K, Hettiarachchi D, Islam F, Mathangasinghe Y, Weeratunga P, et al.
Cochrane Database of Systematic Reviews. 2025;(11):CD013705.
Publication year: 2025

Protocol for the Isolation and Analysis of Extracellular Vesicles From Peripheral Blood: Red Cell, Endothelial, and Platelet-Derived Extracellular Vesicles

Journal Articles
Alvitigala BY, Wijewickrama ES, Denney L, Weeratunga P, Kaluarachchi P, Gnanathasan A, Gooneratne LV
Bio-protocol. 2025;15.
Publication year: 2025

Posterior reversible encephalopathy syndrome in severe leptospirosis: A case report

Journal Articles
Palliyaguru T, Ruwanpathirana P, Aravinthan M, Priyankara D, Weeratunga P
IDCases. 2025;e02330.
Publication year: 2025

Haemotoxicity of snakes: a review of pathogenesis, clinical manifestations, novel diagnostics and challenges in management

Journal Articles
Alvitigala BY, Dissanayake HA, Weeratunga PN, Padmaperuma PCD, Gooneratne LV, Gnanathasan CA
Transactions of the Royal Society of Tropical Medicine and Hygiene. 2025;trae058. DOI: 10.1093/trstmh/trae058
Publication year: 2025

Early circulating biomarkers to predict plasma leakage in dengue fever

Journal Articles
Moallemi S, Tedla N, Sigera C, Weeratunga P, Fernando D, Rajapakse S, Lloyd AR, Rodrigo C
Journal of Infection. 2025;90(2):106401. DOI: 10.1016/j.jinf.2024.106401
Publication year: 2025

Early circulating biomarker signatures of dengue-associated plasma leakage uncovered by proteomics

Preprints
Moallemi S, Tedla AP, Sigera C, Weeratunga P, Fernando D, Rajapakse S, Lloyd AR, Rodrigo C
medRxiv. 2025.
Publication year: 2025

Chikungunya masquerading as dengue infection in Sri Lanka uncovered by metagenomics

Journal Articles
Kabir KA, Sigera C, Maduranga S, Weeratunga P, Rajapakse S, Fernando D, Lloyd AR, Bull RA, Rodrigo C
PLoS One. 2025;20(7):e0326995.
Publication year: 2025

Between-and within-host mutation of dengue virus

Journal Articles
Maduranga S, Valencia BM, Sigera C, Weeratunga P, Fernando D, Rajapakse S, Rapadas M, Deveson IW, Lloyd AR, Bull R
Virology. 2025:110750.
Publication year: 2025

Temporo-spatial cellular atlas of the regenerating alveolar niche in idiopathic pulmonary fibrosis

Preprints
Weeratunga P, Hunter B, Sergeant M, Bull J, Clelland C, Denney L, Vuppusetty C, Burgoyne R, Woo J, Hu T, et al.
medRxiv. 2024. DOI: 10.1101/2024.04.10.24305440
Publication year: 2024

Nine fatal cases of dengue: a case series from an intensive care unit in Sri Lanka

Journal Articles
Ruwanpathirana P, Athukorala H, Palliyaguru T, Weeratunga P, Priyankara D
Tropical Medicine and Health. 2024;52(1):90. DOI: 10.1186/s41182-024-00638-9
Publication year: 2024

Immune mechanisms of granuloma formation in sarcoidosis and tuberculosis

Journal Articles
Weeratunga P, Moller DR, Ho L-P
The Journal of Clinical Investigation. 2024;134(1):e172087. DOI: 10.1172/JCI172087
Publication year: 2024

High serum levels of reactive nitrogen species and low total antioxidant capacity in patients with resistant hypertension compared to those in age-gender matched healthy controls, controlled hypertension and follow up with propranolol treatment in the extended APPROPRIATE trial

Journal Articles
Ranasinghe H, Weeratunga P, Fernando N, Katulanda P, Rajapakse S, Galappatthy P, Handunnetti S, Constantine G
BMC Research Notes. 2024;17(1):223.
Publication year: 2024

Exploring synthesis as a vital cognitive skill in complex clinical diagnosis

Journal Articles
Wijayaratne D, Weeratunga P, Jayasinghe S
Diagnosis. 2024;11(4):351–354. DOI: 10.1515/dx-2024-0076
Publication year: 2024

Unilateral Osler nodes, Janeway lesions and splinter haemorrhages associated with surgical arterio-venous fistula infection: a case report

Journal Articles
Ruwanpathirana P, Athukorala H, Weeratunga P, Karunanayake P
Nature Communications. 2023;14(1):7216. DOI: 10.1038/s41467-023-42965-1
Publication year: 2023

Specific Thoracic CT Pattern of Perihilar Conglomeration and Consolidation Is Associated

Conference Proceedings Publication
Zulfikar S, Weeratunga P, Crawshaw A, et al
Thorax. 2023;78:A53–A54.
Publication year: 2023

Spatial transcriptomic characterization of COVID-19 pneumonitis identifies immune circuits related to tissue injury

Journal Articles
Cross AR, de Andrea CE, Villalba-Esparza M, Landecho MF, Cerundolo L, Weeratunga P, et al.
JCI Insight. 2023;8(2):e157837. DOI: 10.1172/jci.insight.157837
Publication year: 2023

Single cell spatial analysis reveals inflammatory foci of immature neutrophil and CD8 T cells in COVID-19 lungs

Journal Articles
Weeratunga P, Denney L, Bull JA, Repapi E, Sergeant M, Etherington R, et al.
Nature Communications. 2023;14(1):7216. DOI: 10.1038/s41467-023-42965-1
Publication year: 2023

Immune mechanisms in fibrotic pulmonary sarcoidosis

Journal Articles
Weeratunga P, Moller DR, Ho L
European Respiratory Review. 2023;32(169):220178. DOI: 10.1183/16000617.0178-2022
Publication year: 2023

Immune mechanisms in fibrotic pulmonary sarcoidosis

Journal Articles
Weeratunga P, Moller DR, Ho L-P
European Respiratory Review. 2023;32(169):220178. DOI: 10.1183/16000617.0178-2022
Publication year: 2023

Hirudin versus citrate as an anticoagulant for ROTEM platelet whole blood impedance aggregometry in thrombocytopenic patients

Journal Articles
Wickramasinghe W, Alvitigala BY, Perera T, Karunanayake P, Jayasinghe S, Rajapakse S, Weeratunga P, et al.
Platelets. 2023;34(1):2229909. DOI: 10.1080/09537104.2023.2229909
Publication year: 2023

Handbook of Medicine

Books and Guidelines
Praveen Weeratunga, Harsha Dissanayake, Saroj Jayasinghe
Publication year: 2023

Genomic Surveillance of Recent Dengue Outbreaks in Colombo, Sri Lanka

Journal Articles
Maduranga S, Valencia BM, Sigera C, Adikari T, Weeratunga P, Fernando D, et al.
Viruses. 2023;15(7):1408. DOI: 10.3390/v15071408
Publication year: 2023

Emergency Medical Management

Books and Guidelines
Weerathunga P. N, Thilakasiri K
Publication year: 2023

Development of a machine learning model for early prediction of plasma leakage in suspected dengue patients

Journal Articles
Zargari Marandi R, Leung P, Sigera C, Murray DD, Weeratunga P, Fernando D, et al.
PLOS Neglected Tropical Diseases. 2023;17(3):e0010758. DOI: 10.1371/journal.pntd.0010758
Publication year: 2023

Unbiased single cell spatial analysis localises inflammatory clusters of immature neutrophils-CD8 T cells to alveolar progenitor cells in fatal COVID-19 lungs

Preprints
STUDY CC-LSCMCIC, Weeratunga P, Denney L, Bull JA, Repapi E, Sergeant M, et al.
medRxiv. 2022 DOI: 10.1101/2022.12.21.22283654
Publication year: 2022

Rotational thromboelastometry in critical phase of dengue infection: Association with bleeding

Journal Articles
Wickramasinghe W, Alvitigala BY, Perera T, Karunanayake P, Jayasinghe S, Rajapakse S, Weeratunga P, et al.
Research and Practice in Thrombosis and Haemostasis. 2022;6(3):e12704. DOI: 10.1002/rth2.12704
Publication year: 2022

Pulmonary involvement in primary systemic vasculitides

Journal Articles
Makhzoum J-P, Grayson PC, Ponte C, Robson J, Suppiah R, Watts RA, Weeratunga P, et al.
Rheumatology (Oxford). 2022;61(1):319–330. DOI: 10.1093/rheumatology/keab376
Publication year: 2022

Management of Sarcoidosis: When to Treat, How to Treat and for How Long?

Journal Articles
Fraser E, Weeratunga P, Ho L-P
Current Pulmonology Reports. 2022;11(4):151–159. DOI: 10.1007/s13665-022-00295-7
Publication year: 2022
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